CDS

Accession Number TCMCG017C18587
gbkey CDS
Protein Id OMO87219.1
Location join(13615..13698,13786..13890,13993..14135,14226..14322,14423..14469,14865..15063,15364..15430,15563..15742,15819..16006,16104..16998,17151..17295,17395..17467,17664..17840,17922..18047,18131..18275,18391..18503,18670..18785,18891..19026)
GeneID InterPro:IPR002719
Organism Corchorus olitorius
locus_tag COLO4_20737

Protein

Length 1011aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01017364.1
Definition Retinoblastoma-associated protein, B-box [Corchorus olitorius]
Locus_tag COLO4_20737

EGGNOG-MAPPER Annotation

COG_category D
Description Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication
KEGG_TC -
KEGG_Module M00692        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03000        [VIEW IN KEGG]
KEGG_ko ko:K04681        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04110        [VIEW IN KEGG]
ko04218        [VIEW IN KEGG]
ko04350        [VIEW IN KEGG]
ko05165        [VIEW IN KEGG]
ko05203        [VIEW IN KEGG]
map04110        [VIEW IN KEGG]
map04218        [VIEW IN KEGG]
map04350        [VIEW IN KEGG]
map05165        [VIEW IN KEGG]
map05203        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000082        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000902        [VIEW IN EMBL-EBI]
GO:0000904        [VIEW IN EMBL-EBI]
GO:0001558        [VIEW IN EMBL-EBI]
GO:0001708        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006275        [VIEW IN EMBL-EBI]
GO:0006349        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007129        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008356        [VIEW IN EMBL-EBI]
GO:0009553        [VIEW IN EMBL-EBI]
GO:0009555        [VIEW IN EMBL-EBI]
GO:0009566        [VIEW IN EMBL-EBI]
GO:0009567        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010016        [VIEW IN EMBL-EBI]
GO:0010026        [VIEW IN EMBL-EBI]
GO:0010052        [VIEW IN EMBL-EBI]
GO:0010090        [VIEW IN EMBL-EBI]
GO:0010103        [VIEW IN EMBL-EBI]
GO:0010374        [VIEW IN EMBL-EBI]
GO:0010377        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019953        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0022619        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032875        [VIEW IN EMBL-EBI]
GO:0032989        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0040008        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044703        [VIEW IN EMBL-EBI]
GO:0044770        [VIEW IN EMBL-EBI]
GO:0044772        [VIEW IN EMBL-EBI]
GO:0044843        [VIEW IN EMBL-EBI]
GO:0045132        [VIEW IN EMBL-EBI]
GO:0045143        [VIEW IN EMBL-EBI]
GO:0045165        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048229        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0048366        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048468        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0051783        [VIEW IN EMBL-EBI]
GO:0055046        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070192        [VIEW IN EMBL-EBI]
GO:0071514        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090329        [VIEW IN EMBL-EBI]
GO:0090558        [VIEW IN EMBL-EBI]
GO:0090626        [VIEW IN EMBL-EBI]
GO:0090627        [VIEW IN EMBL-EBI]
GO:0090698        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]
GO:1903866        [VIEW IN EMBL-EBI]
GO:2000036        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000653        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAGACACGAAGCCTTCAGCTACAACTTCCAACAACACGGATGCTGATGGCGTTGAAGCTAGATTCACTGCCTTGTGCAAGAATGGGTTATCACTGGATGAGAAAACCTGCACCGAAGCTATGAAGCTATTCAAAGAAACCAAACACCTTTTATCATCATATGTTTCAGCCATTGGGACTAGGATGCCTGAAGAAGCAGAGCGATTTTTCTTTTCGTTTGTTCTGTATTCACTAAAGCGGTTAAGTGAAAAGAGTGGGGAAAATGCACAACAAGGGTCTGATGGAAATGGGTTTACATTATGCCAGATATTGAGAACTACGAAGCTAAATATTGTTGATTTCCTTAAAGAGCTGCATCAGTTTTTGATAAAAGCTGGTCCTGCTTTAAGTAACATGTATGGTGAAGATTGGGAGAGTAGACTTGAGGCAAAGGAGTTGGAGGCCAACATTGATCAGTTGAACCATCTAAGCAAGTCATACAAGCGTAGATTTCGAGAACTCTTCTTGACAAGTGATTCGAATATTGAGAAGCAGCAAAATGCTACCTGTCCTCCTGATTGTGCGTCAGAGTACTGTCGTTTTGGGTGGTTGCTGTTCTTGGCACTCCGTGTGCATGCATTCAGCAGTTTTAAAGATCTAGTGACTTGCACTAATGGTTTTGTTTCAGTACTGGCTATTTTGATTATACATGTTCCTATTCGCTTTAGAAACTTCAAGATCACTGACTCTCCACGTTTTGTTAAGAAAGGTGACAAAGGTGTCGACTTGCTTGCATCTCTTTGCAACATGTATGATGCTTCCGAAGATGATTTGAGGAAAACAATGGAGATGGCGAATAAGTTAATAGAAGATATATTGAAGAAAAAGCCCTGTTCAGCATCTGAATGCAAAGCTGAAACACTGGAAAATATTGATACGGATGGCTTGGTCTATTTTGAAGGTTTAATGGAGGAACAATCTCTTTCATCCAGTTTGAATATTTTGGAAAAGGATTATGATGATGCAAATAAAGGTGAACTGGATGAGAGGGTTTTCATAAAGGAGGAAGATAGTTTTCTTGGCTTAGGGAGCTTGTCTGGAGGATCTGGGAATGTAACTGGTGTCAAGAGGAAATTTGATTCGATAGCTTCACCATCAAAGACAATCTCAAGCCCATTGTCTCCTTATCGTTCTCCTGTATCTCATGCAAATGGTGTCCTTGGGCCACCTAATGCGAGGATGGCTGCTACACCAGTCAGTACTGCAATGACAACTGCCAAGTGGCTTCGTACTGTAGTATGTCCGCTTCCTGCGAAGCCCTCGGCAGAGTTGCAGCGTTTCTTATCATCCTGTGATAAAGATGTTACTAATGATGTGTCACGCAGAGCACATATAATATTGGAGGCAATTTTTCCTAGTAATCATGAATGTAGTGTAACTGGAGGTCTTCAAAGTGCAAACCTGATGGATAATATATGGATGGAACAACGGAGAATGGAAGCACTTAAGTTATACTATAGGGTTTTGGAGGCTATGTGCACGGCAGAGGCCCAAATATTACATGCAACGAATTTAACCTCTTTATTAACTAACGAGAGATTCCATAGATGTATGCTTGCTTGTTCTGCTGAACTGGTGCTAGCAACGCATAAGACAGCCACAATGTTGTTCCCTACAGTTCTTGACAGAACTGGCATTACAGCCTTTGATCTAAGCAAGGTGATAGAGAGTTTCATCAGACATGAGGAGTCTCTACCAAGAGAACTGAGGCGGCATCTTAATTCTCTGGAGGAGAGGCTTTTGGAGAGCATGGTGTGGGAGAAAGGTTCCTCGATGTACAATTCTTTGATAGTTGCAAAACCTGCCCTGTCTACTGAAATAAATCGTCTTGGTTTATTGGCGGACCCAATGCCATCTTTGGATGCAATTGCGATGCATATTAACTTTACTGGAGGCATGCCTACAGTGCCTTCTTTGCAGAAGCATGAGACTTCACCTGGTAATGTTGGTTGCTCAATCTTAGGTCAAAATGGGGATGTCAGGTCTCCCAAGAGACTATGCACAGACTACAGGAGTGTTTTGGTTGAACGGAATTCTTTTACATCACCAGTGAAGGATCGTCTCTTGGCAGTCAAGAAGGCTCCTCCTTTACAATCTGCATTTGCCAGTCCAACACGTCCTAACCCAGGTGGTGGGGGAGAAACATGTGCTGAAACAGGAATAAATATATTTTTTAGAAAGATTAATAAGTTAGCTGCTGTCAGAATTAATGGTATGGTTGAGAGGCTACAACTATCTCAACAGGTTAGGGAGAGCGTGTATTGTCTTTTTAAAGAAATACTTAGCCAGCGGACATCTCTGTTCTTCAATCGTCATATTGACCAGATCATACTTTGCTGTTTTTATGTCATTGCAAAGATTTCTAAGTTTCAGATTTCTCTTACATTTCGAGAAATTGTGCGGAACTATAGTAAGCAACCACAATGTAAACCACAAGTTTTCCACAATGTATTTGTTGATAGGTCATCAAGCCAACTAGATGCGAGAACAAGGGAGGATCATGTTGATATTATTACATTCTACAATAAAGTATTTATTCCTGCTGTAAAGCCTGTGCTGGCAGAACTTGGTCTGGCAGGAACAACAACAAAAACAAGTCGAGTTCCTGAAGCCAACAATAGTAATGATGGTCCATGCCCTGGATCACCTAAAGTTTCTCCTTTTCCAAATCTCCCTGATATGTCCCCCAAAAAAGTATCTGCTACACACAATGTATATGTGTCTCCATTGCGAACATCCAAGATGGATGCTCTAATCTCGCATAGCTCAAAAAGCTATTATGCTTGTGTTGGAGAGAGTACTCGTGCCTTTCAGAGCCCGTCAAAAGACCTGACTGCCATCAACAATCACTTGAATGGTACGCGGAAGATCAGAGGTGCACTCAACTTTGATGATGTCGACGTTGGCTTGGTTAGTGATTCCATGGTTGCAAAAAGCCTTTACCTTCAGAACGGGAGCTCCCCTCCTTTAAAATCTGAGCAACCCGAATCATAG
Protein:  
MEDTKPSATTSNNTDADGVEARFTALCKNGLSLDEKTCTEAMKLFKETKHLLSSYVSAIGTRMPEEAERFFFSFVLYSLKRLSEKSGENAQQGSDGNGFTLCQILRTTKLNIVDFLKELHQFLIKAGPALSNMYGEDWESRLEAKELEANIDQLNHLSKSYKRRFRELFLTSDSNIEKQQNATCPPDCASEYCRFGWLLFLALRVHAFSSFKDLVTCTNGFVSVLAILIIHVPIRFRNFKITDSPRFVKKGDKGVDLLASLCNMYDASEDDLRKTMEMANKLIEDILKKKPCSASECKAETLENIDTDGLVYFEGLMEEQSLSSSLNILEKDYDDANKGELDERVFIKEEDSFLGLGSLSGGSGNVTGVKRKFDSIASPSKTISSPLSPYRSPVSHANGVLGPPNARMAATPVSTAMTTAKWLRTVVCPLPAKPSAELQRFLSSCDKDVTNDVSRRAHIILEAIFPSNHECSVTGGLQSANLMDNIWMEQRRMEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTATMLFPTVLDRTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALSTEINRLGLLADPMPSLDAIAMHINFTGGMPTVPSLQKHETSPGNVGCSILGQNGDVRSPKRLCTDYRSVLVERNSFTSPVKDRLLAVKKAPPLQSAFASPTRPNPGGGGETCAETGINIFFRKINKLAAVRINGMVERLQLSQQVRESVYCLFKEILSQRTSLFFNRHIDQIILCCFYVIAKISKFQISLTFREIVRNYSKQPQCKPQVFHNVFVDRSSSQLDARTREDHVDIITFYNKVFIPAVKPVLAELGLAGTTTKTSRVPEANNSNDGPCPGSPKVSPFPNLPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTRAFQSPSKDLTAINNHLNGTRKIRGALNFDDVDVGLVSDSMVAKSLYLQNGSSPPLKSEQPES